Tomáš Pluskal

All publications

Latest publications

Reproducible mass spectrometry data processing and compound annotation in MZmine 3

S. Heuckeroth T. Damiani A. Smirnov O. Mokshyna C. Brungs A. Korf J. Smith P. Stincone L. Nothias T. Hyötyläinen M. Orešič U. Karst P. C. Dorrestein D. Petras X. Du J. J. J. van der Hooft R. Schmid T. Pluskal

Nature Protocols 2024: Early View

Learning to design protein-protein interactions with enhanced generalization

A. Bushuiev R. Bushuiev P. Kouba A. Filkin M. Gabrielová M. Gabriel J. Sedlář T. Pluskal J. Damborský S. Mazurenko J. Šivic

12th International Conference on Learning Representations (ICLR), May 7-11, 2024 in Vienna, 1-26, ICLR (2024)

Revealing data leakage in protein interaction benchmarks

A. Bushuiev R. Bushuiev J. Sedlář T. Pluskal J. Damborský S. Mazurenko J. Šivic

12th International Conference on Learning Representations (ICLR), May 7-11, 2024 in Vienna, 1-13, ICLR (2024)

Studying Plant Specialized Metabolites Using Computational Metabolomics Strategies

L. Mutabdžija A. Myoli N. F. de Jonge T. Damiani R. Schmid J. J. J. van der Hooft F. Tugizimana T. Pluskal

Plant Functional Genomics (Fatemeh Maghuly, Ed.), Methods in Molecular Biology, Vol. 2788, 97–136, Humana Press (2024)